Genomics & Bioinformatics Core Facility

Other Publications

Conference Materials

Hazekamp, Nicholas; Sarro, Joseph; Choudhury, Olivia; Gesing, Sandra; Emrich, Scott; Thain, Douglas, "Scaling Up Bioinformatics Workflows with Dynamic Job Expansion: A Case Study Using Galaxy and Makeflow," in e-Science (e-Science), 2015 IEEE 11th International Conference on , vol., no., pp.332-341, Aug. 31 2015-Sept. 4 2015 doi: 10.1109/eScience.2015.39

Choudhury, Olivia; Rajan, Dinesh; Hazekamp, Nicholas; Gesing, Sandra; Thain, Douglas; Emrich, Scott, "Balancing Thread-Level and Task-Level Parallelism for Data-Intensive Workloads on Clusters and Clouds," in Cluster Computing (CLUSTER), 2015 IEEE International Conference on , vol., no., pp.390-393, 8-11 Sept. 2015 doi: 10.1109/CLUSTER.2015.60

Wei Zhang; Erliang Zeng; Dan Liu; Jones, S.; Emrich, S., "A machine learning framework for trait based genomics," Computational Advances in Bio and Medical Sciences (ICCABS), 2012 IEEE 2nd International Conference on , vol., no., pp.1,6, 23-25 Feb. 2012. doi: 10.1109/ICCABS.2012.6182648

Andrew Thrasher, Douglas Thain, Scott Emrich, Zachary Musgrave, "Shifting the bioinformatics computing paradigm: A case study in parallelizing genome annotation using MAKER and Work Queue", ICCABS, 2012, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS), 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) 2012, pp. 1-6, doi:10.1109/ICCABS.2012.6182647

Kalyanaraman, A.; Emrich, S.J.; Schnable, P.S.; Aluru, S., "Assembling genomes on large-scale parallel computers," Parallel and Distributed Processing Symposium, 2006. IPDPS 2006. 20th International , vol., no., pp.10 pp.,, 25-29 April 2006. doi: 10.1109/IPDPS.2006.1639259

Books and Book Chapters

Zeng, E., C. Ding, K. Mathee, L. Schneper, G. Narasimhan. 2012. Gene function prediction and functional network: the role of gene ontology, DATA MINING: Foundations and Intelligent Paradigms, Dawan E. Holmes and Lakhmi C. Jain (Eds.), Springer, p123-162, 2012, ISBN 978-3-642-23150-6.

Tan, J. C. and Ferdig, M. T. (2012) Genetic Crosses in Plasmodium Falciparum: Analysis of Drug Resistance, in Evolution of Virulence in Eukaryotic Microbes (eds L. D. Sibley, B. J. Howlett and J. Heitman), John Wiley & Sons, Inc., Hoboken, NJ, USA. doi: 10.1002/9781118308165.ch13